PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_30592
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family FAR1
Protein Properties Length: 173aa    MW: 19779.8 Da    PI: 10.8201
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_30592genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-11114173666
        FAR1   6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 
                 YA+++GF+vrk++s    ++++ ++++fvC k+g+++e +++  + r +ra trt+C a++
  PEQU_30592 114 YAHHIGFTVRKEHSGFWPNSKKLKTKDFVCGKSGFKKELNDT-ITVRFKRADTRTDCPAMI 173
                 *************************************99888.99999***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-9114173IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MLVQSHPRRE TSGRGQSRGR GRNHGGQRGG RGDHQVSIST QEVLSISLWK KAAQEEMFVI  60
EKIGMEGPTM EGQVYRGESV AVLVKCYPCL HPRQRNCFMW LSTMRRKPMN NIVYAHHIGF  120
TVRKEHSGFW PNSKKLKTKD FVCGKSGFKK ELNDTITVRF KRADTRTDCP AMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.13e-06FAR1-related sequence 6