PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_30122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family FAR1
Protein Properties Length: 177aa    MW: 20369 Da    PI: 9.1473
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_30122genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.81.8e-1833117390
        FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 Y++YA++vGF+vrk+++++  ++++ + +++ C k g+++e +++    + ++a trt+Ck +++ + + +++w v+k+ ++H H+la
  PEQU_30122  33 YRAYAHHVGFTVRKNNTTNWPNSKKLKVKDYICGKTGYKKEPNNT---VKLRKADTRTDCKIMVRFHVDFESNWTVAKFIENHIHPLA 117
                 9***************************************99888...7788999*******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-1633117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQSSEATHVC NDPIAENFLS SIIHNEKEAY ESYRAYAHHV GFTVRKNNTT NWPNSKKLKV  60
KDYICGKTGY KKEPNNTVKL RKADTRTDCK IMVRFHVDFE SNWTVAKFIE NHIHPLAKSG  120
DKHLLRSSRR MSELNADLLR SMTDSEIKAT HAYNFIATEV GGVENLECTK RDAFNFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574582.11e-103protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020592540.11e-103protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2I0VPA52e-50A0A2I0VPA5_9ASPA; Protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-12FAR1-related sequence 5