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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_29939 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 20428 Da PI: 10.3041 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00015 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H PEQU_29939 50 FECQYCFREFTNSQALGGHQNAH 72 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.97E-6 | 47 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-4 | 48 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.655 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSKIQCHKPC NTTLKLFGFA LQASVDPSPI SDSSFSTSTA SLAASEGRKF ECQYCFREFT 60 NSQALGGHQN AHKKEREQQK RAQLHHAAAS SLYTRANPIP SSFTTPQPLL PAHKPAAASP 120 PATAYFYFSR PSFQLTHSRA FPPAPNTLPR IRSGPVSLGR FPAPTNAAGS DSSYGVDLHL 180 SLAPASSRIA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596614.1 | 1e-135 | zinc finger protein GIS3-like | ||||
TrEMBL | A0A2I0WWP6 | 3e-78 | A0A2I0WWP6_9ASPA; Zinc finger protein 6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12356 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 1e-16 | C2H2 family protein |