PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_28931

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 378aa MW: 41364.8 Da PI: 9.6642

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_28931	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	261.6	2.8e-80	6	369	2	373
GRAS 2 velLlecAeavssgdle..laqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL+++Aea+++ +++ la +L+rl+ l + ++++ ++Rl +fteAL+ la+++++ + +e +al+l +++sP+ f+h PEQU_28931 6 LHLLIAAAEALRTAHKQreLAGVILKRLKSLllpSESAATIFERLGLHFTEALQILLAGKGPTFN------LPP---AGDEPSALQLMQDMSPYTSFGH 95 699******996655459*****9988444555899*************444433......222...45677999********** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg...ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 +taNq Ileav+g++rvHiiDfd+++GlQW++L+qaL s ++g ++slRiT+++ + s+ ++eetg+rL+ fA+++++pf f + +++ PEQU_28931 96 FTANQSILEAVNGSRRVHIIDFDVKEGLQWASLMQALVSDKNGtftSHSLRITAIAGGK--STVKVEETGQRLTAFASSVNLPFTFGHCKLGLNQRFRP 192 **********************************7776545589****944..9*********************965556678899 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+ +gEa++ n+vl+ + +++s++ + ++++ + + +v+vve+e+ +e F+ rf++ +e y+++++++e+++ ++ ++r++vEre+ PEQU_28931 193 AALKPIEGEAIILNCVLHSPQAPHRSAAYIK---SFISSAAAVGASLVTVVEEESGGrKAEGFMGRFVDEMERYWVMMEAVEQGFQKQRRARKMVEREI 288 9999*******99999977777777...****************8877999********************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373 ++++iv +v+ e + +++W + GF+ v +s ++++ a +l++ ++ dgy+vee+ s+ lvl Wk r+Lvs SaW PEQU_28931 289 FAPRIVAAVSRVCCEEEGGGGGVGEW---MAGGGFRRVGFSGFNVSLALMLVKLFG-DGYEVEEDgSNKLVLRWKWRRLVSSSAW 369 *****99999955666666666...999********************.**998999************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.698	1	350	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-78	6	369	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
KNLRILHLLI AAAEALRTAH KQRELAGVIL KRLKSLLLPS ESAATIFERL GLHFTEALQI 60 LLAGKGPTFN LPPAGDEPSA LQLMQDMSPY TSFGHFTANQ SILEAVNGSR RVHIIDFDVK 120 EGLQWASLMQ ALVSDKNGTF TSHSLRITAI AGGKSTVKVE ETGQRLTAFA SSVNLPFTFG 180 HCKLGLNQRF RPAALKPIEG EAIILNCVLH SPQAPHRSAA YIKSFISSAA AVGASLVTVV 240 EEESGGRKAE GFMGRFVDEM ERYWVMMEAV EQGFQKQRRA RKMVEREIFA PRIVAAVSRV 300 CCEEEGGGGG VGEWMAGGGF RRVGFSGFNV SLALMLVKLF GDGYEVEEDG SNKLVLRWKW 360 RRLVSSSAWS PATMKNCL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

KNLRILHLLI AAAEALRTAH KQRELAGVIL KRLKSLLLPS ESAATIFERL GLHFTEALQI  60
LLAGKGPTFN LPPAGDEPSA LQLMQDMSPY TSFGHFTANQ SILEAVNGSR RVHIIDFDVK  120
EGLQWASLMQ ALVSDKNGTF TSHSLRITAI AGGKSTVKVE ETGQRLTAFA SSVNLPFTFG  180
HCKLGLNQRF RPAALKPIEG EAIILNCVLH SPQAPHRSAA YIKSFISSAA AVGASLVTVV  240
EEESGGRKAE GFMGRFVDEM ERYWVMMEAV EQGFQKQRRA RKMVEREIFA PRIVAAVSRV  300
CCEEEGGGGG VGEWMAGGGF RRVGFSGFNV SLALMLVKLF GDGYEVEEDG SNKLVLRWKW  360
RRLVSSSAWS PATMKNCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-30	79	371	97	380	Protein SCARECROW
5b3h_A	8e-30	79	371	96	379	Protein SCARECROW
5b3h_D	8e-30	79	371	96	379	Protein SCARECROW
5hyz_A	6e-30	27	369	20	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020587510.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2I0WM25	0.0	A0A2I0WM25_9ASPA; Nodulation-signaling pathway 2 protein
STRING	XP_002513781.1	1e-114	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7580	31	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-83	GRAS family protein