PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_28663
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 529aa    MW: 60344.2 Da    PI: 4.7695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_28663genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08382424246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +rW++ + e +++a++q+G++ ++ I   ++ +R++ q+k ++ +
       PEQU_28663 382 NRWSKTDTEFFYQAIRQFGTD-FAMIQLLFP-TRSRQQVKAKFKN 424
                      69*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.2E-26374459No hitNo description
SMARTSM007175.7E-8380428IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-4381428IPR009057Homeodomain-like
SuperFamilySSF466891.94E-9382430IPR009057Homeodomain-like
CDDcd001675.32E-6383424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MFPMRDLDDD LFLQPETMTE TLHSDSVLGD DILATVTTAV AERSSKFNPK CRIINNRNQP  60
KPSKCRASES PFSTSKFHNA ADEPPSMTKG AKSNFELESL PLHDEFSDLH GLSFSADGLN  120
ESLEVKAQNC SPAHSIEERV CCGNIIDLEA QSLVENEDLP SMETEQTTNH IEEPNLEDST  180
PNIVPNDDTG QSSRKTRQRN KKLKTSEENI SCKTHDGENT VSEMDDDYDG EGYNDNSMPK  240
QKRWKLPKRS SKKSREQENP IESNEKAAGE PGSTVEASHT PKKKLPHGSS RCKRTKRQVN  300
KALLDIPDDE LDRKQIAIRD LIRLAGFKER LSNKVEAVFK NLFDNQSVEK EQELNGDDEN  360
RDIQPEVPRL NYHSYMRRPP QNRWSKTDTE FFYQAIRQFG TDFAMIQLLF PTRSRQQVKA  420
KFKNEQRKHP LQIADALVHR SKDHSHFEKA IQHLQTMAEQ KSKNEAGDPT TAQSQDEADQ  480
NEEEGKESNS KEDQDVNFSE DWDGYDHIPA DDDFDPISEA ADEMENSWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S7e-12345448386482Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S7e-12345448386482Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S7e-12345448386482Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S7e-12345448386482Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V8e-12345448386482Transcription factor TFIIIB component B''
6f40_W8e-12345448386482Transcription factor TFIIIB component B''
6f41_W8e-12345448386482Transcription factor TFIIIB component B''
6f42_W8e-12345448386482Transcription factor TFIIIB component B''
6f44_W8e-12345448386482Transcription factor TFIIIB component B''
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573234.10.0uncharacterized protein LOC110019763
TrEMBLA0A2I0VY761e-158A0A2I0VY76_9ASPA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.15e-35MYB_related family protein