PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_28314

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Dof

Protein Properties

Length: 283aa MW: 31853.6 Da PI: 8.9513

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_28314	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	32	91	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk+C+ryWt GG++rnvPvG+grrk+k+s PEQU_28314 32 PDKILPCPRCRSMDTKFCYFNNYNVNQPRHFCKNCQRYWTDGGSMRNVPVGAGRRKSKSS 91 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	29	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-32	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
DELNTSESME EKHEDQQNQN SNSTIDKTLK KPDKILPCPR CRSMDTKFCY FNNYNVNQPR 60 HFCKNCQRYW TDGGSMRNVP VGAGRRKSKS STASHHYHYH HITIPDDVQP INHSSPLKLN 120 GTVLSFGSMN SNGEDKLCRS MVTTLNSNDE GNKALNSNFQ AFPHLNGNHW SNPWSHTPFY 180 PETPFLAMQL RCSGLNSSVL GKRSREGNTL NHGKSGMEDK SDKCLWIPIE GHEKAAKRSV 240 LVKMGFEKDE ANGVVKKRSA EASQVLCANP AALSRSLSFH ERS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571645.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2I0WGG3	5e-89	A0A2I0WGG3_9ASPA; Cyclic dof factor 1
STRING	XP_009376278.1	2e-66	(Pyrus x bretschneideri)
STRING	POPTR_0004s12120.1	2e-66	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-55	cycling DOF factor 1