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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_28135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 637aa MW: 68459 Da PI: 6.593 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.8 | 7.5e-15 | 222 | 281 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g PEQU_28135 222 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 281 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 46.9 | 7.1e-15 | 324 | 375 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PEQU_28135 324 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 375 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-11 | 222 | 281 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-17 | 222 | 291 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.66E-22 | 222 | 291 | No hit | No description |
SMART | SM00380 | 2.0E-29 | 223 | 295 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 223 | 290 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.164 | 223 | 289 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 224 | 235 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.8E-10 | 324 | 375 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.80E-24 | 324 | 385 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 324 | 385 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-33 | 325 | 389 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-18 | 325 | 384 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 325 | 383 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 365 | 385 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
DWSMKSLDFK GSTSELSMIV DSSGGKCGNM DEVVVEEPKL EDFLGSGGSG GPPPFSDHEP 60 RIGSIVGDHY LYSNCSLQVP GVASTSGGGN GSIGLSMIKT WLRNQPTPSG SMMESKEEGE 120 DVGTTFIFNY KWKITITKIV VVRGRGGPSQ SLALSMSTGS QPTSALQLVA AEMAGGGDCG 180 GESLLLENEG KGGGSCGKVD VHSGVIEAVP RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL 240 WDNSCRREGQ TRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SNYEKELEEM 300 KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE 360 EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSTLPI GGAAKRLKDV GDHSESSIEG 420 QRSDDSGTSI VVASHIREAG LAGYPSHHYG WPAMAFQQQQ QQNIGLHYPY AAAVSQQRGW 480 CKPEPDVTLG HGVHDMQQEI HLGSTTHNFF QPSGIHSMVG MESSVEQSGG SSSSMLYGGS 540 GYVIPMGTMM IEGGQGGGGG GGNGGGYGDS EVKNSLGYEN LLGASDPYCG RNVYYSANMV 600 KETGYDQGDG WMVNSARQGG GISNCHGAPL FTLWNDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC836896 | 0.0 | KC836896.1 Erycina pusilla AP2-1 (AP2-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597745.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q6PQQ4 | 1e-137 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | A0A2I0W5Z1 | 0.0 | A0A2I0W5Z1_9ASPA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
STRING | XP_008804192.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-129 | AP2 family protein |