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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_28089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 555aa MW: 63744.5 Da PI: 9.2374 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.1e-14 | 454 | 498 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT Ed +l av+ +G+++W ++a+++ gRt +qc rw++ l PEQU_28089 454 EWTSKEDAKLCTAVETFGNNNWQLVASHLD-GRTSNQCSVRWRNTL 498 6*****************************.************975 PP | |||||||
2 | Myb_DNA-binding | 34.9 | 3.4e-11 | 506 | 545 | 2 | 42 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 grW+ +Ed++l+ av ++G ++Wk+Ia+ ++ gRt q ++ PEQU_28089 506 GRWSIDEDKRLKIAVILFGAKNWKKIAQFIP-GRTQSQSRE 545 8******************************.***988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.471 | 297 | 393 | IPR017877 | Myb-like domain |
SMART | SM00717 | 13 | 301 | 395 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-9 | 304 | 320 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-9 | 365 | 406 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.52E-12 | 375 | 443 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.014 | 394 | 446 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.024 | 398 | 448 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 407 | 456 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.66E-21 | 431 | 498 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.739 | 447 | 502 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-11 | 451 | 500 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-11 | 454 | 498 | No hit | No description |
Pfam | PF13921 | 1.8E-12 | 455 | 516 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-16 | 457 | 502 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.38E-9 | 499 | 546 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 503 | 546 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.092 | 503 | 553 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0024 | 504 | 553 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-7 | 507 | 546 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MMPNPSGHVE DSDCCSDGES SASDDIAYLH RLQEQFLPPA EASGSPGTPP ILKPIRAFLP 60 LDTDDEDDFE TLRAIQRRFA QYGGETNKDF SPETSSIFSA DTFEQNPHNL IKSGDNACSL 120 SVLPKFVKSF IDKPKSLDNG PEPLDTCLRG SAMDKEHPEE NQSNFNQEDM FYNLSVRQFI 180 SSRFPKSVQN FVYALKKNRS CQRFIREKLM EIEAKIEVNK KLKERMKCLM DFHTACKRKA 240 GYSFCQKRDP RVRLISSRKQ KSSSTVKENS KKSSALYFAP AENFQMSNYK MVTRRFPVSL 300 RKRQWSNTEK DRLLNGVKQQ CLEVLFLNSM NLGSDFDGLN DSIITSTFDI AHHQLTPEIL 360 RSFIHLVNWD RLASMYLPKR SGPSCESSWL NHGDPIINCN PWTSMEDKKL LFIVQDRGLY 420 DWIGIALTLG TNRTPFQCLA RYQRSLNPHI LNREWTSKED AKLCTAVETF GNNNWQLVAS 480 HLDGRTSNQC SVRWRNTLLP ERKKVGRWSI DEDKRLKIAV ILFGAKNWKK IAQFIPGRTQ 540 SQSRERPIFK SGKMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-25 | 368 | 546 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-25 | 368 | 546 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020687746.1 | 0.0 | uncharacterized protein LOC110103393 isoform X6 | ||||
TrEMBL | A0A2I0W7F5 | 0.0 | A0A2I0W7F5_9ASPA; Myb-related protein 3R-1 | ||||
STRING | XP_008793540.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-123 | myb domain protein 4r1 |