 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PEQU_28087 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
| Family |
NF-YB |
| Protein Properties |
Length: 220aa MW: 23379.7 Da PI: 6.3551 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PEQU_28087 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 184.4 | 8.9e-58 | 25 | 120 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+k+re+egek
PEQU_28087 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKFREMEGEK 120
89********************************************************************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MADSDNESGG HNNSNAALSS DYSSREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE 60
CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVEPLKIYL QKFREMEGEK 120
VGGSSSQSQK DGGSGNGGNG GVGGGMGMGS NAGGFASGAA GMYGGGGMMM MGQQMYGSAQ 180
LPSYHHQQQQ QQQQHHQQIA MSGGGGWSSS PTSSDRQGRI
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1n1j_A | 8e-49 | 23 | 115 | 1 | 93 | NF-YB |
| 4awl_B | 7e-49 | 23 | 115 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 7e-49 | 23 | 115 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
