PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 403aa MW: 44832.3 Da PI: 5.996

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_27701	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.4e-07	167	188	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H PEQU_27701 167 FCTICGKGFKRDANLRMHMRGH 188 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-5	164	191	No hit	No description
PROSITE profile	PS50157	11.946	166	193	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	166	188	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-6	167	215	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	7.7E-4	167	188	No hit	No description
PROSITE pattern	PS00028	0	168	188	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	213	246	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	251	273	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MLNNLSFLEQ KIHNIQGVVH SIVNQKSQIS SLPNEFAVQQ QVLTTDLTSI IVDLISTAGN 60 LLPSIKNNLF SSNSPPAQSC NSFDPSTQLE ADAPFPNHDP PTLEIEKCAG EYNELKKSED 120 DGREANHIED HDTKESEDGA ETDNLLLGSY EVLQLAKEEI LAPHTHFCTI CGKGFKRDAN 180 LRMHMRGHGE EYKTPAALSK PSKNSEPTLI KRYSCPFVGC KRNKDHKGFQ PLKTLLCVKN 240 HYKRTHCDKS YICSKCHSKK FSVLADLKTH EKHCGCDKWL CSCGTTFSRK DKLFGHVALF 300 QGHSPALPSE EGCGLGSSEH VGLEGNGYGF STNYLNDDVD IKLFDDDRGY LSTLSFEPYE 360 YGVSDDFMKV AFSFMENSPI ICPSELSDFG EKKGDSSDSH CML

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MLNNLSFLEQ KIHNIQGVVH SIVNQKSQIS SLPNEFAVQQ QVLTTDLTSI IVDLISTAGN  60
LLPSIKNNLF SSNSPPAQSC NSFDPSTQLE ADAPFPNHDP PTLEIEKCAG EYNELKKSED  120
DGREANHIED HDTKESEDGA ETDNLLLGSY EVLQLAKEEI LAPHTHFCTI CGKGFKRDAN  180
LRMHMRGHGE EYKTPAALSK PSKNSEPTLI KRYSCPFVGC KRNKDHKGFQ PLKTLLCVKN  240
HYKRTHCDKS YICSKCHSKK FSVLADLKTH EKHCGCDKWL CSCGTTFSRK DKLFGHVALF  300
QGHSPALPSE EGCGLGSSEH VGLEGNGYGF STNYLNDDVD IKLFDDDRGY LSTLSFEPYE  360
YGVSDDFMKV AFSFMENSPI ICPSELSDFG EKKGDSSDSH CML

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020588326.1	0.0	zinc finger protein STOP1 homolog isoform X1
Refseq	XP_020588328.1	0.0	zinc finger protein STOP1 homolog isoform X2
Swissprot	Q943I6	1e-145	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2I0VUD9	0.0	A0A2I0VUD9_9ASPA; Zinc finger protein STOP1 like
STRING	OB01G47470.1	1e-150	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-140	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]