PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_26814
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24690 Da    PI: 7.4802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_26814genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.22.5e-191256145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k ie++s r v fskRr+g++KKAeELS+L da+v v+ fs+ g+
  PEQU_26814 12 KLIESSSGRMVCFSKRRKGLFKKAEELSILSDAKVTVLAFSQAGR 56
                569***************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-18464IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.591458IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-20463IPR002100Transcription factor, MADS-box
CDDcd001203.88E-21558No hitNo description
PRINTSPR004042.0E-13626IPR002100Transcription factor, MADS-box
PfamPF003198.1E-201458IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-132641IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-134162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAGKGRKKLD NKLIESSSGR MVCFSKRRKG LFKKAEELSI LSDAKVTVLA FSQAGRPYCS  60
DPTTLDSLLC PQTLLETDSL LCPPLAISAE KETGICWEFD FIESMAGNLL PFWYNKQNVQ  120
FMDCEELRRL DNAILEYRHM QLAKNSCFLV LVHFHVCIVY IFVCRLFVAF SCVECLLHFR  180
VVTMIVFVTI SCCNHDCNQC WLLFFRNNDF VGCLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591382.12e-78MADS-box transcription factor 23-like
TrEMBLA0A2I0X9H15e-60A0A2I0X9H1_9ASPA; MADS-box transcription factor 23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.27e-14AGAMOUS-like 71