PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_26065
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 653aa    MW: 72047.9 Da    PI: 8.6473
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_26065genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-2494195199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   +++++ l
  PEQU_26065  94 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGKVWKFRHIYRGTPRRHLLTTGWSNFVNEKKLVAGDSIVFL--RTENGDL 188
                 89****************************996555555..8999*********************************************..4588999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  PEQU_26065 189 CVGIRRA 195
                 ****997 PP
2Auxin_resp111.21e-36263345283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 + +a+ +++F+v+Y+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +d +rWp+S+Wr+L+
  PEQU_26065 263 SASAARGQPFKVIYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISAVHVADLLRWPGSPWRLLQ 345
                 567899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-3885197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-3090196IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-2293194No hitNo description
SMARTSM010197.6E-2394196IPR003340B3 DNA binding domain
PfamPF023621.0E-2294195IPR003340B3 DNA binding domain
PROSITE profilePS5086313.64894196IPR003340B3 DNA binding domain
PfamPF065071.5E-31262345IPR010525Auxin response factor
PROSITE profilePS5174515.542566653IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MVQMPSVNSK VYYFPQGHAE HAQTPVDFGT SVRIPPLILC RVLSVKFMAD SVTDEVFAKI  60
QLIPLKSNEP DYNEEDELVL GNNGSDLQEK LASFAKTLTQ SDANNGGGFS VPRYCAETIF  120
PRLDYSADPP VQTVLAKDVH GKVWKFRHIY RGTPRRHLLT TGWSNFVNEK KLVAGDSIVF  180
LRTENGDLCV GIRRAKRGIG GGPEMSTGWN PPAGNCMYGG FSVFLREDES KFNRSNGNGG  240
RISSGSSMRG RGKVKADSVM EASASAARGQ PFKVIYYPRA STPEFCVKAS AVRAAMRIQW  300
CSGMRFKMAF ETEDSSRISW FMGTISAVHV ADLLRWPGSP WRLLQVSWDE PDLLQNVKRV  360
SPWLVELVSN MPAIHLAPPF SPPRKKPRLP HPEFSLDVPL STSPFTENTL IPSSSPLCCL  420
PDNAAAVVGI QGPRHSQYGA NLPELRFGKL HSGLFHTGFH RLDHFAPSHR ISTGLLVPNS  480
SVREDVSCLL TIGNASQNAI KPKFMLFGKP IITEEQLSLS PNNSNSDKTT NLSYGSGSSI  540
LQNGTGDNNS SSEGPVWYRD RKPSELGPCK LFIESEDVGQ TLDLSSFGSY EELYRRLANM  600
FGLEKAELNS RLLYRDIAGV VKHTGDEPFA EFMKAARRLT IFMDSGSDNI GKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-72136663388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592362.10.0auxin response factor 18-like
RefseqXP_020592363.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2I0VRC90.0A0A2I0VRC9_9ASPA; Auxin response factor
STRINGXP_008785274.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]