PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_25843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20124.4 Da PI: 4.2899 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.8e-18 | 2 | 51 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+ PEQU_25843 2 YLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 51 88******.**********843...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.535 | 1 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.07E-31 | 1 | 59 | No hit | No description |
SMART | SM00380 | 8.6E-33 | 1 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 2 | 58 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-10 | 2 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 2 | 13 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-29 | 2 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
RYLGVRRRPW GRYAAEIRDP ATKERHWLGT FDTAEEAAVA YDRAARSLRG ASARTNFAYP 60 DLPPGSSLTP FLSPDLPSPH PFLIPPPPLL LPSTTILPSH QSLPPVIEEE IITPAPERVC 120 NGGGLELGEF NYSDTIGDEE DILSGQIYFD EEFLHSPLFG PMPEASEYIV EDFQLDGRSS 180 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 1 | 57 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592760.1 | 1e-129 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A2I0VNE4 | 3e-74 | A0A2I0VNE4_9ASPA; Ethylene-responsive transcription factor ERF087 | ||||
STRING | GSMUA_Achr3P02360_001 | 7e-57 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 3e-25 | ERF family protein |