PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25301
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 576aa    MW: 64777.4 Da    PI: 5.0764
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25301genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.8e-331302212102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+yei++d++l++++sws  g+sfvv+d+ ef++ vLp++Fkhsnf+SF+RQLn+YgF+k++ ++          eF++++F +gk++ll++i+
    PEQU_25301 130 FLSKTYEIVNDPSLDRIVSWSPAGQSFVVWDPIEFSRIVLPRHFKHSNFSSFLRQLNTYGFRKIDGDR---------LEFANEEFLRGKRTLLRNIN 217
                   9****************************************************************999.........78****************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
    PEQU_25301 218 RRRS 221
                   *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.1E-53126219IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-32126219IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-35127219IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.8E-18130153IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-30130219IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-18168180IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340169193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.8E-18181193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MLPNLVQTPS FPSSCSSPLS RSPPTSTASA SFDASSFCSS SGLIETQYPT ISQFIDCAAP  60
SSSSSQSTPF QVTPSSSSPT LEPKLECLQG VSNKSLNILS PSAESFSCAG VVVDIPRPLE  120
LLLRSPITPF LSKTYEIVND PSLDRIVSWS PAGQSFVVWD PIEFSRIVLP RHFKHSNFSS  180
FLRQLNTYGF RKIDGDRLEF ANEEFLRGKR TLLRNINRRR SPRVQPKVPF LGSSMGMELL  240
GVEDELQKLR SEKYMLMQEV LKMKQEHLVT IKEMDNLNRR LQSAELRQKQ MIAFWVKVLR  300
NPVFLMQLKQ SKKLREISSV RSTKASLEYE QPSEDCMNKS RTRQIVKYRQ SFCEPDSIFA  360
LQDLESSSET QQTDHLLQAM SVERGPVLMI KDGSSNKPLE MTEPSFNQNA SIKWKNIMIS  420
GEDASLGSAD FYVSSPEEMA KASIFSLGKC SAQPVLQIDK INSKSVGEIQ GDKECHTEYL  480
ASAVNVVEEI GCKEEFWDVD FEAGRSFNSE HDVRDNIFCI NPVVPGDEIG LSEMWDIGSH  540
FNDGFDIDKW IGREFLLLPD MDEDVLRDDH TKNSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2312521915120Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590277.10.0heat stress transcription factor A-3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-68heat shock transcription factor A3