PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24426
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 365aa    MW: 40829.2 Da    PI: 8.384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24426genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.7e-062345123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ Cgk F r  nL+ H r H
  PEQU_24426 23 FVCEVCGKGFQRDQNLQLHKRGH 45
                89******************988 PP
2zf-C2H210.80.0015130148523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg+ Fsr++ L +H   +
  PEQU_24426 130 DCGTIFSRRDGLITHKAFC 148
                 9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-62245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.94E-82345No hitNo description
SMARTSM003550.0142345IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5932345IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SMARTSM00355456595IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-488121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.94E-895120No hitNo description
SMARTSM00355290100120IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDADPNAEVI ALSPKSLLAK NKFVCEVCGK GFQRDQNLQL HKRGHNLPWK LKQRQNNEVV  60
RRKVYICPEP SCSNHDPSRA LGDLAGIKKH FSRKHGEKRW SCDKCSKKYA VLSDWKAHSK  120
ICGTKEYRCD CGTIFSRRDG LITHKAFCEV LAIENYRRMM RTSPFNQPFL PHPTALHNLD  180
SSTSAGLIPE IPELISTATT SPNHHHINYI NHSIHSSNLC GHLKPSPLPS LSFSATALQQ  240
KVTEMSSSVT RPSELHALFS SNSQEWSNGD FGHGTSVSTP LQLQSFLSCS EFVYPNEEPM  300
GGLVMSAKRE EGREEDFRVA MNYAGDQTGR NESTRDFLRL RVALHEELLN LSAVETCMGS  360
SASFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-2796157364Zinc finger protein JACKDAW
5b3h_F5e-2796157364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592440.10.0protein indeterminate-domain 11-like
TrEMBLA0A2I0X3P31e-177A0A2I0X3P3_9ASPA; Zinc finger protein NUTCRACKER
STRINGXP_008793218.15e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.17e-92C2H2-like zinc finger protein