PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24220
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 122aa    MW: 13806.3 Da    PI: 9.2331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24220genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-051941123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ Fs+   L  H++ H
  PEQU_24220 19 YECTFCKRGFSTAQALGGHMNIH 41
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.23E-71745No hitNo description
Gene3DG3DSA:3.30.160.601.5E-41743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3441946IPR007087Zinc finger, C2H2
PfamPF139122.1E-61938IPR007087Zinc finger, C2H2
SMARTSM003550.00991941IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
AVDEARTSFQ ATASAGRFYE CTFCKRGFST AQALGGHMNI HPRDRAKFRP TLSSPPAPKR  60
SEETHHPYSR EQRLLHSQAV ESTSPNYAVY FPGEEMRKEK GKNQADLELR LCHSRGKEHE  120
SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020682843.13e-40transcriptional regulator TAC1-like
TrEMBLA0A2I0W5D88e-39A0A2I0W5D8_9ASPA; Transcriptional regulator TAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-17C2H2 family protein