PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23959
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family FAR1
Protein Properties Length: 308aa    MW: 36036.9 Da    PI: 9.3805
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23959genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.21.2e-1721108290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y +YA+ +GFsvrk++ +++ ++++i+++ f C k+g+++e+k+  ++ + +++ tr gC  +++ k + +g+w+v+k+ +  nH+la
  PEQU_23959  21 LYYSYAHCTGFSVRKDYISYRPNSRNIKTKAFLCAKSGFKRETKNI-STVKFHKSDTRRGCSTMIRYKVNLHGNWKVKKIIESYNHPLA 108
                 699******************9********************9988.8899999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1521108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
EHTADKLLAT IAHNESEAYA LYYSYAHCTG FSVRKDYISY RPNSRNIKTK AFLCAKSGFK  60
RETKNISTVK FHKSDTRRGC STMIRYKVNL HGNWKVKKII ESYNHPLAKP NDQQLLRSNR  120
HISEDKGEVW SSMTEAEIGA IHAFNCLATK NGQRGRFIIR DALNFIQKDW KERIENGDSN  180
FLCNYSRRDK LKISCLCWHI SRKIMSKVNC FNYNMSIQDP FYKCLSDCDS KEEFKQVWVE  240
MLEKGNLHDY EWLDQLYKIR NKLSTTFNEK SFSMGLLVTQ QSESKNNVCH DFSKSTSSVT  300
NYFLGYCQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2I0VS863e-43A0A2I0VS86_9ASPA; Protein FAR1-RELATED SEQUENCE 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-11FAR1-related sequence 5