PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB

Protein Properties

Length: 211aa MW: 23805.2 Da PI: 9.3879

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_23940	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++ +G g W++ ++ g+ R++k+c++rw +yl PEQU_23940 14 KGAWTKEEDERLISHIRSHGEGAWRSLPQAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	54.9	2e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++ PEQU_23940 67 RGNFTHDEDDLIINLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.67	9	61	IPR017930	Myb domain
SMART	SM00717	6.4E-12	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.33E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.11E-9	16	61	No hit	No description
PROSITE profile	PS51294	27.3	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	8.12E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLISHIR SHGEGAWRSL PQAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF THDEDDLIIN LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG 120 IDPATHRPIS AVDFSGGGGG AAAEKRSSRG KGDRVKVARL PRCPDLNLEL CISAPLEEMQ 180 HDLLVEESNC GGEFLRLGSS FLIDYRRLEM K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269\|PubMed:7920701}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF769469	0.0	KF769469.1 Phalaenopsis equestris MYB transcription factor 4 (MYB4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585535.1	1e-154	myb-related protein Zm38-like
Swissprot	P20025	2e-92	MYB38_MAIZE; Myb-related protein Zm38
TrEMBL	A0A096ZX65	1e-152	A0A096ZX65_PHAEQ; MYB transcription factor 4
STRING	GLYMA11G11450.1	4e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-87	myb domain protein 4

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]