PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

PEQU_23889

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

FAR1

Protein Properties

Length: 212aa MW: 24856.4 Da PI: 8.6574

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_23889	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37	1.1e-11	15	89	2	87
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y++Y +++GFsvrk++ + +++++i++++fvC + + +raetrtgC a+++ +++++w v+kl +e H PEQU_23889 15 VYCAYTHHIGFSVRKDHATFWTNSRNIKTKDFVCGNATVKY-----------RRAETRTGCPAMIRYGVDEESNWTVKKLIEEFMH 89 7*******************************7765544...........46788**********************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-9	15	90	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
LLETLVHNEK EAYEVYCAYT HHIGFSVRKD HATFWTNSRN IKTKDFVCGN ATVKYRRAET 60 RTGCPAMIRY GVDEESNWTV KKLIEEFMHG SCGLQLHAST NNENEFFEFF IKNKNLDDHM 120 FNTTWVVHFD SSSLDIKCSC RKFKMMGLLC SLSLRVLNFL HIKKIPVKYL LLRWSENAKK 180 MENAKRDVYN SSGYMHLQQS QSSHDIKGDL FF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020590422.1	2e-63	LOW QUALITY PROTEIN: nuclear pore complex protein NUP98A-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	4e-11	FAR1-related sequence 7