PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_23731

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C3H

Protein Properties

Length: 345aa MW: 38382.3 Da PI: 6.767

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_23731	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.2	1.6e-09	120	141	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C FaHg PEQU_23731 120 VACPDFRK-GNCKRGDACEFAHG 141 68****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-6	116	142	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.995	117	143	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-7	120	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-5	122	143	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.343	151	175	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	151	174	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MMMGDSGYRN PTVDVPPWSP FDDQFHLSAA GDYLLSEAGL AALQRYLPAN EVALEHDPDE 60 DAELTDPPID AYSCDEFRIY EFKVRRCARG RSHDWTECPY AHPGEKARRR DPRKFHYSGV 120 ACPDFRKGNC KRGDACEFAH GVFECWLHPA RYRTQPCKDG TACRRRVCFF AHTPEQLRYL 180 PHQKQQRMDS YDGSPMRLDG CFPKGLISSS PTSTLISPPL SPPVESPPVS PMGSSVNDVL 240 ASLRKLQISK VKSMPSSWGG LGASGVGFRS GFCSLPSTPT KAPAIVGRGW LDFDGFAEVE 300 EAVERVESGR ALRAKMYERL SKESGLERLD NSPAPDVGWV SELIM

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MMMGDSGYRN PTVDVPPWSP FDDQFHLSAA GDYLLSEAGL AALQRYLPAN EVALEHDPDE  60
DAELTDPPID AYSCDEFRIY EFKVRRCARG RSHDWTECPY AHPGEKARRR DPRKFHYSGV  120
ACPDFRKGNC KRGDACEFAH GVFECWLHPA RYRTQPCKDG TACRRRVCFF AHTPEQLRYL  180
PHQKQQRMDS YDGSPMRLDG CFPKGLISSS PTSTLISPPL SPPVESPPVS PMGSSVNDVL  240
ASLRKLQISK VKSMPSSWGG LGASGVGFRS GFCSLPSTPT KAPAIVGRGW LDFDGFAEVE  300
EAVERVESGR ALRAKMYERL SKESGLERLD NSPAPDVGWV SELIM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580576.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	O82199	1e-114	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A2I0W614	0.0	A0A2I0W614_9ASPA; Zinc finger CCCH domain-containing protein 2
STRING	XP_010244375.1	1e-143	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-111	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]