PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23348
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 310aa    MW: 34722 Da    PI: 8.2695
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23348genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP943e-29461673112
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg......... 88 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ++ +i +l+ +++++ +      + +sssssa n+ ++         
  PEQU_23348  46 GGKDRHSKVSTIRGLRDRRVRLSVPTAIKLYDLQDKLGLNQPSKVVDWLLNVSQNEIEKLPPLPFIPGNLIrfpqSLASSSSSAINDDITenvnnydhr 144
                 78*************************************************************666664333222222222222222222333344443 PP

         TCP  89 ........kaaksaakskksqksaasalnlak 112
                         +         ++  +++ + +++k
  PEQU_23348 145 apkfnvfsN---------NAVVDQNVTAQFQK 167
                 334444442.........22222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-2947171IPR005333Transcription factor, TCP
PROSITE profilePS5136927.77647105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MIKDTREKES LHKQHGDTNE AKKTCTRLWP PTLGNPRVVR VSQTFGGKDR HSKVSTIRGL  60
RDRRVRLSVP TAIKLYDLQD KLGLNQPSKV VDWLLNVSQN EIEKLPPLPF IPGNLIRFPQ  120
SLASSSSSAI NDDITENVNN YDHRAPKFNV FSNNAVVDQN VTAQFQKSSA HLNNSDIFLK  180
NRSLRDITME SEIDQKGGVG KYDQLDEIDS TTMAYSFFQQ FESNVPQAEV TQGFLFASSG  240
SPSLISLMPA GSQALVPSVF SLYENNHCNF QMPTTFAQLL PLNSSRTSLH AGNAKIHFHK  300
SETHIDINDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1752106155Putative transcription factor PCF6
5zkt_B3e-1752106155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583847.10.0uncharacterized protein LOC110026953
TrEMBLA0A1D6ZNH50.0A0A1D6ZNH5_PHAEQ; TCP transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5