PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23088
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 148aa    MW: 16604.3 Da    PI: 7.5852
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23088genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.8e-211258147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k ie+ s r v fskRr+g++KKAeEL vLC+++vav+ fs+ gkly
  PEQU_23088 12 KLIESASARMVCFSKRRKGLFKKAEELPVLCGTKVAVLAFSQGGKLY 58
                569*******************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-21461IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.894458IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-20460IPR002100Transcription factor, MADS-box
CDDcd001201.99E-23558No hitNo description
PRINTSPR004049.3E-15626IPR002100Transcription factor, MADS-box
PfamPF003191.9E-211458IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-152641IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-154162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAGKGRKKLE NKLIESASAR MVCFSKRRKG LFKKAEELPV LCGTKVAVLA FSQGGKLYCS  60
DFETFDTLLC PQTQLKADSL LCPPPAVAAE KEAEICWEFD FNEAMAGNSL PFWYNKPNVQ  120
CMDCEELRRL ESVILEYGHL QLGRNSCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591362.11e-105uncharacterized protein LOC110032171
TrEMBLA0A2I0X9H13e-58A0A2I0X9H1_9ASPA; MADS-box transcription factor 23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.23e-16MIKC_MADS family protein