PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_23088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 148aa MW: 16604.3 Da PI: 7.5852 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.8e-21 | 12 | 58 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k ie+ s r v fskRr+g++KKAeEL vLC+++vav+ fs+ gkly PEQU_23088 12 KLIESASARMVCFSKRRKGLFKKAEELPVLCGTKVAVLAFSQGGKLY 58 569*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-21 | 4 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.894 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-20 | 4 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.99E-23 | 5 | 58 | No hit | No description |
PRINTS | PR00404 | 9.3E-15 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-21 | 14 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-15 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-15 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MAGKGRKKLE NKLIESASAR MVCFSKRRKG LFKKAEELPV LCGTKVAVLA FSQGGKLYCS 60 DFETFDTLLC PQTQLKADSL LCPPPAVAAE KEAEICWEFD FNEAMAGNSL PFWYNKPNVQ 120 CMDCEELRRL ESVILEYGHL QLGRNSCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020591362.1 | 1e-105 | uncharacterized protein LOC110032171 | ||||
TrEMBL | A0A2I0X9H1 | 3e-58 | A0A2I0X9H1_9ASPA; MADS-box transcription factor 23 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.2 | 3e-16 | MIKC_MADS family protein |