PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23085
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 148aa    MW: 16615.2 Da    PI: 5.9593
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23085genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.5e-231258147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k ie+ s r v fskRr+g++KKAeELSvLC+++vav+ fs+ gkly
  PEQU_23085 12 KLIESASARMVCFSKRRKGLFKKAEELSVLCGTKVAVLAFSQAGKLY 58
                569*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-23461IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-20459IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.609458IPR002100Transcription factor, MADS-box
CDDcd001201.02E-24558No hitNo description
PRINTSPR004047.7E-16626IPR002100Transcription factor, MADS-box
PfamPF003197.1E-231458IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-162641IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-164162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAGKGRKKLE NKLIESASAR MVCFSKRRKG LFKKAEELSV LCGTKVAVLA FSQAGKLYCS  60
DFETFDTLLC PQTQLEADSF LCPPPAVAAE KEAEICWEFD FNEAMAGNSL PFWYNKPNVQ  120
CMDCEELRRL ESAILEYGHL QLGRNSCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591382.11e-106MADS-box transcription factor 23-like
TrEMBLA0A2I0X9H12e-59A0A2I0X9H1_9ASPA; MADS-box transcription factor 23
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.45e-17MIKC_MADS family protein