PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_23085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 148aa MW: 16615.2 Da PI: 5.9593 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.3 | 8.5e-23 | 12 | 58 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k ie+ s r v fskRr+g++KKAeELSvLC+++vav+ fs+ gkly PEQU_23085 12 KLIESASARMVCFSKRRKGLFKKAEELSVLCGTKVAVLAFSQAGKLY 58 569*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-23 | 4 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-20 | 4 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.609 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.02E-24 | 5 | 58 | No hit | No description |
PRINTS | PR00404 | 7.7E-16 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-23 | 14 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-16 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-16 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MAGKGRKKLE NKLIESASAR MVCFSKRRKG LFKKAEELSV LCGTKVAVLA FSQAGKLYCS 60 DFETFDTLLC PQTQLEADSF LCPPPAVAAE KEAEICWEFD FNEAMAGNSL PFWYNKPNVQ 120 CMDCEELRRL ESAILEYGHL QLGRNSCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020591382.1 | 1e-106 | MADS-box transcription factor 23-like | ||||
TrEMBL | A0A2I0X9H1 | 2e-59 | A0A2I0X9H1_9ASPA; MADS-box transcription factor 23 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.4 | 5e-17 | MIKC_MADS family protein |