PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_22029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 35540.2 Da PI: 6.8405 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.9 | 1.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k++G g+W+ +r g++R++k+c++rw +yl PEQU_22029 14 KGPWTPEEDEKLIEYIKKHGHGSWRHLPRNAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ l+++++ +lG++ W++I+ +++ gRt++++k++w+++l PEQU_22029 67 RGKFSEEEEGLIIQLHSMLGNK-WSLISTKLP-GRTDNEIKNHWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.788 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-17 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.403 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRSPCCDEV GVKKGPWTPE EDEKLIEYIK KHGHGSWRHL PRNAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEGLIIQ LHSMLGNKWS LISTKLPGRT DNEIKNHWNT HLKKKLLLMG 120 IDPVTHRRRA DLGFLANLPN LLSSTNPGCR IPNPWDSALQ LQAEAANLAQ VQILQGLLQV 180 LIASSSSSSS PNNSNVSPNL NMNNLMGSSL TPLQNIEALL NGSFGLPHGS ILAASTAQMN 240 HDYQIHDPLQ DHPEIKYIEK HDLEFSTPSL VSASPENTTS VSLKQEHILS NEVSAAIDPW 300 DALNLNDLNG ADLGWKEILE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020588674.1 | 0.0 | protein ODORANT1-like | ||||
Swissprot | Q9S9Z2 | 3e-81 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2I0WU10 | 1e-171 | A0A2I0WU10_9ASPA; Transcription factor MYB39 | ||||
STRING | Aquca_005_00496.1 | 1e-102 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1126 | 37 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-80 | myb domain protein 9 |
Publications ? help Back to Top | |||
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