PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_21854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 27389 Da PI: 7.8443 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 66 | 87 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +C+++++++ +L H + H PEQU_21854 66 CAICSRVYPTSRLLSIHVSEvH 87 *****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 13 | 37 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.6 | 64 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 102 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 104 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MELSELGFPY WRAVALDLTE DEMYQIQKIE DSGSSFVHCP IVSCGARLSC LEDFEDHYHA 60 RHMSACAICS RVYPTSRLLS IHVSEVHDSF FAAKVARGFP MYECLVEGCG AKLKSYKSRK 120 QHLIHKHKFP SSFEFKKAKP SKHRREINQH KQHDQTKEEA MEGGASFLVQ QNEDEKVSHY 180 ERMEVEEMDE LVSAVSKLRT SDCSTPSSVS FGRRHNRAFT FLPRSLRQNI KHRSGAME |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020591409.1 | 1e-170 | LOW QUALITY PROTEIN: zinc finger protein 511 | ||||
TrEMBL | A0A2I0VII9 | 1e-117 | A0A2I0VII9_9ASPA; Uncharacterized protein | ||||
STRING | XP_008807434.1 | 2e-91 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10911 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 9e-79 | zinc ion binding;nucleic acid binding;zinc ion binding |