PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_20894
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21197.9 Da    PI: 5.3519
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_20894genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.2e-131352443
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +n++ r  t++ R +g+ KKA+ELS LC+++v+v  fs++
  PEQU_20894 13 NNSRARRATYITRVTGLKKKASELSLLCGVDVLVASFSPE 52
                68999******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.66E-16278IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.091250IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-11261IPR002100Transcription factor, MADS-box
CDDcd002668.17E-17376No hitNo description
PRINTSPR004041.3E-5424IPR002100Transcription factor, MADS-box
PfamPF003197.1E-121452IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-52439IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-53960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
GMGRAKLEMK YRNNSRARRA TYITRVTGLK KKASELSLLC GVDVLVASFS PELNAVQSWP  60
EQDSDEFRWI KERYVQFRRS EMATPFPSPS LPLASQEMLA MSSKLTEIRE RLRFLQGEAS  120
SNAATASSHF QQDQTALQVQ DTIPLSPFPT HISMEDAPEF FLSDSPMRSS TDDFAWCDSL  180
LDYEKW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588166.11e-135agamous-like MADS-box protein AGL36
TrEMBLA0A455LA635e-44A0A455LA63_9ASPA; MADS-box protein-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.12e-11AGAMOUS-like 30