PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_20438
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 404aa    MW: 44517.1 Da    PI: 9.1917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_20438genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-056385123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  PEQU_20438 63 FICEICNKGFQRDQNLQLHRRGH 85
                89*******************88 PP
2zf-C2H211.60.00087139161123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H + +
  PEQU_20438 139 WKCDKCSKKYAVQSDWKAHSKIC 161
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-76285No hitNo description
Gene3DG3DSA:3.30.160.601.0E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.6E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355110104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.76E-7134159No hitNo description
SMARTSM00355150139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSNLTSASGE ASVSSNQQSS FASPNPNPNT QPSKKKRNLP GNPDPEAEVM ALSPKTLMAT  60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KKVYICPEVT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AEESARVNQH PLLFTNQPLE GQMQPLNMRQ DIPPWLGVNQ LNIPSSIYGS  240
RLDQECGQEN HLMQQQPVST MAHMSATALL QKAAQMGATM SRPTSIHSQM VGHSGGNVNA  300
HNNGVFGLEL SSSHHNENIG VNGGTSLIHD LMINSLPQAG SGFQLGSFNE HYGGGGGGGG  360
NDGMTRDFLG LRAFSHKDLL NLAGLETCIS SSASYEQQNK KPWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35135198366Zinc finger protein JACKDAW
5b3h_F2e-35135198366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189101KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573141.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2I0WKX60.0A0A2I0WKX6_9ASPA; Zinc finger protein MAGPIE
STRINGXP_008793218.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-108indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]