PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_20128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 17239.3 Da PI: 10.0772 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.2e-20 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + +r++lg+f tae Aa a+++a++k++g PEQU_20128 12 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFETAEAAAIAYDNAALKFKG 61 8********.**********9...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.22E-24 | 11 | 70 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-33 | 11 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 12 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 12 | 70 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.829 | 12 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-38 | 12 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MHEGSEKEKK KHYRGVRQRP WGKWAAEIRD PNKAARVWLG TFETAEAAAI AYDNAALKFK 60 GKRAKLNFPE RVQNSDMFMN DRGILITQQN HQSSISTSDL ALYESQASTI SFASPSQQSF 120 APEVMLNFGD YDSGSYSRPK RAKGEYSRKD II |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 9 | 76 | 2 | 70 | ATERF1 |
3gcc_A | 2e-28 | 9 | 76 | 2 | 70 | ATERF1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571254.1 | 1e-108 | ethylene-responsive transcription factor ERF115-like | ||||
TrEMBL | A0A2I0WKC6 | 1e-73 | A0A2I0WKC6_9ASPA; Ethylene-responsive transcription factor ERF113 | ||||
STRING | XP_007139323.1 | 1e-37 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-30 | ERF family protein |