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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 64aa MW: 7216.32 Da PI: 9.8344 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 6e-12 | 9 | 57 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr...krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvA p + l++f tae+Aa a++ a+ k++ge PEQU_19613 9 LYRGVRQRH-WGKWVAL---P-----PpkpHSCILNTFNTAEDAAMAYDTAAFKFHGE 57 59******9.*******...8.....332467778*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.44E-21 | 8 | 64 | No hit | No description |
SMART | SM00380 | 3.5E-13 | 9 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-7 | 9 | 57 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.83 | 9 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-19 | 9 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-17 | 9 | 64 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-11 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 46 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
PVTPPPTKLY RGVRQRHWGK WVALPPPKPH SCILNTFNTA EDAAMAYDTA AFKFHGELVN 60 LNFP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414393.1 | 5e-19 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | O65665 | 1e-17 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
Swissprot | Q9SKT1 | 3e-17 | ERF53_ARATH; Ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | A0A1J3HLQ5 | 2e-19 | A0A1J3HLQ5_NOCCA; Uncharacterized protein (Fragment) | ||||
STRING | EMJ22730 | 2e-19 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 6e-12 | ERF family protein |
Publications ? help Back to Top | |||
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