PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_19428

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Dof

Protein Properties

Length: 343aa MW: 38231 Da PI: 8.0972

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_19428	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	7.9e-40	43	103	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s PEQU_19428 43 PDKILPCPRCKSMETKFCYYNNYNINQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKSKSSA 103 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.8E-32	45	101	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	46	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.612	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
DESNDLQNEE KMEQKSTSPE NSKADDENNE SNNDPENKSN KKPDKILPCP RCKSMETKFC 60 YYNNYNINQP RHFCKNCQRY WTAGGSMRNV PVGAGRRKSK SSASNQHFRH ITIPDCVRAD 120 SEFVHHLQPL KSNGMVLSFG SDAPLYESMA SVMKLAEKTM TNKNQKLEQG SPNSNEQAKV 180 SSDLNCYGIP PNVSNFTGSL LPNQWAIPPF PFPFYPIPAY WSMPWLPPQL PTSPSSGCLG 240 KHSRDGNLLN QNLSDRGHAS VPESCFWVPK TMMIDVPEKL QSAQCGQPWD SGMIKADLVG 300 GGMGLFKAFQ SAGDHKMNST VVPQFLLANP AALSRSFNFQ ERS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

DESNDLQNEE KMEQKSTSPE NSKADDENNE SNNDPENKSN KKPDKILPCP RCKSMETKFC  60
YYNNYNINQP RHFCKNCQRY WTAGGSMRNV PVGAGRRKSK SSASNQHFRH ITIPDCVRAD  120
SEFVHHLQPL KSNGMVLSFG SDAPLYESMA SVMKLAEKTM TNKNQKLEQG SPNSNEQAKV  180
SSDLNCYGIP PNVSNFTGSL LPNQWAIPPF PFPFYPIPAY WSMPWLPPQL PTSPSSGCLG  240
KHSRDGNLLN QNLSDRGHAS VPESCFWVPK TMMIDVPEKL QSAQCGQPWD SGMIKADLVG  300
GGMGLFKAFQ SAGDHKMNST VVPQFLLANP AALSRSFNFQ ERS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572791.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2I0WDV9	1e-170	A0A2I0WDV9_9ASPA; Cyclic dof factor 2
STRING	XP_006482609.1	2e-92	(Citrus sinensis)
STRING	XP_006431167.1	2e-92	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-60	cycling DOF factor 2