PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19363
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 328aa    MW: 35718.6 Da    PI: 8.6057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19363genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12161208355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k Lq
  PEQU_19363 161 QEHIMAERKRREKLSQRFIALSAIVPDL-----KKMDKASVLGDAIKYLKTLQ 208
                 5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16161221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-12163212No hitNo description
SMARTSM003537.1E-14164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MPDPNYQQWE LSSLDQLISP NIWDDDLHQT LSSESQTLNP AASITSNTFS SSSSIDSSHA  60
NAAMAANERL KKMAKTKSWD SIATLQKSIL PPTVSSPSIL SFGRPDSPDN SSELYKNLVI  120
ATVNTEEGKG NSLKRSHQAM AALQGKKKAS AVASRPSSHN QEHIMAERKR REKLSQRFIA  180
LSAIVPDLKK MDKASVLGDA IKYLKTLQEK VKCLEDQAAK ATVKSTILIK KSQLSTITTN  240
DETDISSSGE STTDGGHSQP EIEVKLSDRT VLIKIHCECK KGILVRALSE IEKLQLCVVS  300
ISALPFPASS LDITVMAQVI IPYNSQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13163235979Transcription factor MYC2
5gnj_B8e-13163235979Transcription factor MYC2
5gnj_E8e-13163235979Transcription factor MYC2
5gnj_F8e-13163235979Transcription factor MYC2
5gnj_G8e-13163235979Transcription factor MYC2
5gnj_I8e-13163235979Transcription factor MYC2
5gnj_M8e-13163235979Transcription factor MYC2
5gnj_N8e-13163235979Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERKRRE
2167172RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572247.10.0transcription factor bHLH18-like isoform X3
SwissprotQ9T0724e-45BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2I0WRY91e-174A0A2I0WRY9_9ASPA; Transcription factor bHLH25
STRINGXP_008790398.13e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-47bHLH family protein