PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18365.5 Da PI: 7.9452 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ CgksFs+ L H ++H PEQU_19049 52 YHCSVCGKSFSSYQALGGHKSSH 74 89************999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.8E-9 | 51 | 121 | No hit | No description |
SMART | SM00355 | 0.0056 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.803 | 52 | 74 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.3E-13 | 52 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 52 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.97 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.7E-10 | 99 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAAEALSSFF FFPLFSPSSS PSPNHPPPPQ PTAEDLPGWE GYVTNQPPHP LYHCSVCGKS 60 FSSYQALGGH KSSHRRASVT GGEERRWSSA GVSDGSGPHR CSLCFRRFPT GQALGGHKRL 120 HYWEPAPLPP PSYSDISVNG CGFDLNLPPE DEEPRSALLR KKIRVSDH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020593613.1 | 1e-120 | zinc finger protein ZAT6-like | ||||
TrEMBL | A0A2I0V7T1 | 1e-36 | A0A2I0V7T1_9ASPA; Zinc finger protein AZF3 | ||||
STRING | Sb01g031900.1 | 4e-23 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 6e-24 | zinc finger of Arabidopsis thaliana 6 |