PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | CPP | ||||||||
Protein Properties | Length: 211aa MW: 23525.4 Da PI: 8.7971 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.2 | 5.1e-16 | 74 | 113 | 3 | 42 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +k+C+Ck+skClk+YC+Cfaag +C+++C C++C+N++e+ PEQU_18999 74 QKRCSCKRSKCLKLYCDCFAAGMFCNKSCACQGCSNNSEN 113 79**********************************9985 PP | |||||||
2 | TCR | 53.2 | 5.8e-17 | 158 | 196 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkkskClkkYCeC++ag+ Cs C+Ce+CkN PEQU_18999 158 RHKRGCNCKKSKCLKKYCECYQAGVGCSLGCRCEGCKNV 196 589***********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.5E-15 | 72 | 113 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.284 | 73 | 198 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.5E-12 | 74 | 110 | IPR005172 | CRC domain |
SMART | SM01114 | 4.5E-17 | 158 | 199 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-12 | 160 | 195 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQPEFSVHHI TPCSRKGLPG VETSKSEDSA QTSLGKKRQA CILLTLFYCL PFSLFFLFLL 60 FRFNRKKNPE IEGQKRCSCK RSKCLKLYCD CFAAGMFCNK SCACQGCSNN SENEEMVSST 120 RQLIEARNPL AFAPKVVHAN GDLKESADNK HITPPSARHK RGCNCKKSKC LKKYCECYQA 180 GVGCSLGCRC EGCKNVYGMK EGMLETSLVL P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-19 | 74 | 196 | 11 | 121 | Protein lin-54 homolog |
5fd3_B | 2e-19 | 74 | 196 | 11 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020590388.1 | 1e-123 | uncharacterized protein LOC110031506 isoform X1 | ||||
Swissprot | Q9LUI3 | 5e-53 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A2I0WBE3 | 1e-100 | A0A2I0WBE3_9ASPA; Protein tesmin/TSO1-like CXC 2 | ||||
STRING | GSMUA_Achr2P17070_001 | 3e-62 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-42 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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