 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PEQU_18783 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
| Family |
MYB |
| Protein Properties |
Length: 233aa MW: 25869.9 Da PI: 7.0165 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PEQU_18783 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd l +++ +G g +W + +++ g++R++k+c++rw++yl
PEQU_18783 14 RGPWSPEEDTALRSYIHDHGFGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
89*********************************************97 PP
|
| 2 | Myb_DNA-binding | 47.2 | 5.1e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g++T+eEd+ + + ++ G++ W+ Ia++++ gRt++++k++w++
PEQU_18783 69 GSFTKEEDDMIFSLYNKIGSR-WSVIASKLP-GRTDNDVKNHWNT 111
79*******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKRGPWSPE EDTALRSYIH DHGFGGNWIA LPQKAGLKRC GKSCRLRWLN 60
YLRPDIKHGS FTKEEDDMIF SLYNKIGSRW SVIASKLPGR TDNDVKNHWN TKLKKRGMEG 120
KGSLSESYYR TSTPLLPSQP LIPSPYVSSS TSCVLTPATV YQEFLSSDES LDASLQQEDH 180
RGGSEYGFLW ELDFGSIADL LSSSGSDGTL SSIWTNDSGE GKLGELPQSV SYF
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
