PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_18413
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 320aa    MW: 35929.2 Da    PI: 5.6543
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_18413genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.63.8e-072452782154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++++++ L +++gL+ +q+ +WF N+R +
  PEQU_18413 245 KWPYPTEDDKAGLVQETGLQLKQINNWFINQRKR 278
                 469*****************************87 PP
2ELK29.32e-10199220122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  PEQU_18413 199 ELKHELKQGYKEKIVDIREEIL 220
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193579IPR005540KNOX1
PfamPF037909.4E-183778IPR005540KNOX1
SMARTSM012564.1E-2590145IPR005541KNOX2
PfamPF037911.3E-1995144IPR005541KNOX2
SMARTSM011886.1E-4199220IPR005539ELK domain
PROSITE profilePS512139.969199219IPR005539ELK domain
PfamPF037897.0E-7199220IPR005539ELK domain
PROSITE profilePS5007111.175219282IPR001356Homeobox domain
SuperFamilySSF466891.41E-15221286IPR009057Homeodomain-like
SMARTSM003892.4E-9221286IPR001356Homeobox domain
CDDcd000865.87E-11222283No hitNo description
Gene3DG3DSA:1.10.10.605.1E-25226283IPR009057Homeodomain-like
PfamPF059202.6E-17239278IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSDPATAGNC REGDTTTVGG DGLEQQAVEG TWQNARYKAE ILGHPLYEQL LSAHVACLRI  60
ATPVDQLPRI DAQLAQSQQV VAKYSALGAG QMITGEDKEL DQFMTHYVLL LCSFKEQLQQ  120
HVRVHAMEAV MACWELEQSL QSVTPGEGTG ATMSDDDDDQ EDSETNFFDG SLDGPDSMGF  180
GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSTLKAWW  240
QSHSKWPYPT EDDKAGLVQE TGLQLKQINN WFINQRKRNW HSNPSSSSTS KSKRKRYTVI  300
SSSFFRFASY IKPSGTLLPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12222286872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275295RKRNWHSNPSSSSTSKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583566.10.0homeobox protein knotted-1-like 13 isoform X1
SwissprotP480001e-172KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLM0TEV70.0M0TEV7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P05170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-161KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]