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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Dof | ||||||||
Protein Properties | Length: 258aa MW: 27987.6 Da PI: 9.4176 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.4 | 1.3e-37 | 19 | 77 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 kekal+cprC+stntkfCyynnys sqPr+fCk+CrryWt+GG+lrnvP+Ggg+rk+k+ PEQU_18376 19 KEKALNCPRCNSTNTKFCYYNNYSFSQPRFFCKSCRRYWTQGGTLRNVPIGGGSRKKKR 77 57899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-27 | 15 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-33 | 21 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
METAQWHQQG LERKVRPYKE KALNCPRCNS TNTKFCYYNN YSFSQPRFFC KSCRRYWTQG 60 GTLRNVPIGG GSRKKKRFNP SSSLPPPAAT KSAPIVSSTS MNLQPSKLIP HELSSFSLFS 120 SSSSMSATRS GISFEGSSLS KENELSANAR KRLRMLAPSS MSLYCQELHA LGLQKQGGFG 180 MEELMWSGVK LPLQYGVGGM KESKEAGGDG EHALPFEDLN QVTVKGSCDE IVGGVDPSLF 240 WEGVMGNDGG GGGGGGGW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020582215.1 | 0.0 | dof zinc finger protein DOF4.6-like, partial | ||||
TrEMBL | A0A2I0WMP9 | 4e-85 | A0A2I0WMP9_9ASPA; Dof zinc finger protein DOF4.6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 9e-37 | Dof family protein |