PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 114aa MW: 13259.9 Da PI: 4.3332 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27.9 | 6.2e-09 | 2 | 46 | 34 | 80 |
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +s+++ + + rs++qCk kwe l +ykki ++e +++s ++ PEQU_18264 2 ISDNCLAMNVVRSSNQCKRKWEMLLADYKKILNWELLS--REESYWS 46 899*******************************9884..4444565 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MISDNCLAMN VVRSSNQCKR KWEMLLADYK KILNWELLSR EESYWSLPEE RKKDYGLPVS 60 FQKEVFDAMD AVIQVQQQQS DSNNSDPEQI YSVAELERST MNADSGMFSC LFSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581175.1 | 2e-70 | uncharacterized protein LOC110025196 | ||||
Refseq | XP_020581176.1 | 2e-70 | uncharacterized protein LOC110025196 | ||||
Refseq | XP_020581177.1 | 2e-70 | uncharacterized protein LOC110025196 | ||||
Refseq | XP_020581179.1 | 2e-70 | uncharacterized protein LOC110025196 | ||||
TrEMBL | A0A2I0VI72 | 2e-52 | A0A2I0VI72_9ASPA; Uncharacterized protein | ||||
STRING | XP_008781712.1 | 8e-31 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6353 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 5e-17 | sequence-specific DNA binding transcription factors |