PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_18047
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family G2-like
Protein Properties Length: 301aa    MW: 32760.6 Da    PI: 5.9983
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_18047genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.8e-30144197155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +prl+Wtp+LH+rFve+v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  PEQU_18047 144 RPRLVWTPQLHKRFVEVVAHL-GIKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 197
                 59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.694138200IPR017930Myb domain
SuperFamilySSF466891.79E-19142201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-30143201IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-24145197IPR006447Myb domain, plants
PfamPF002492.9E-8147196IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGEEAGASGE GRVLDWEDGL PTGDHLTPLS THLVPSELAS AFSIPPADPK TMLDVDRASQ  60
HTISCLTARR KAASSSLLDG LPKPFASGAP DGENCFIVVE AEDSDEFPLS ERLGRLPQIG  120
GEEDADSPAL HGENSWDDQR VLKRPRLVWT PQLHKRFVEV VAHLGIKNAV PKTIMQLMNV  180
DGLTRENVAS HLQKYRLYVK RTSGYSNEGL SSSDHTSAST TVNQNFHEQQ PPEPSSTPPL  240
PPPTPPKTNS MAMPYTVPAM IPMPIYAFPL HHSHGVVPLN NHQGGTPYHG FDTSNRYSAN  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-33144200157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580707.10.0transcription factor PCL1-like
RefseqXP_020580708.10.0transcription factor PCL1-like
RefseqXP_020580709.10.0transcription factor PCL1-like
RefseqXP_020580710.10.0transcription factor PCL1-like
RefseqXP_020580711.10.0transcription factor PCL1-like
RefseqXP_020580712.10.0transcription factor PCL1-like
SwissprotQ94DH37e-56PCL1_ORYSJ; Transcription factor PCL1
SwissprotQ9LTH41e-55PCLL_ARATH; Transcription factor BOA
TrEMBLA0A2I0WAX01e-133A0A2I0WAX0_9ASPA; Two-component response regulator ARR2
STRINGXP_008801647.12e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-58G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]