PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17820
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 419aa    MW: 46371.7 Da    PI: 9.4446
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17820genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093644011954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  PEQU_17820 364 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 401
                 664459******************************88 PP
2BELL121.53.6e-39226297172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erqelq+kkakL+ +l eV++rY+qy++q+q+vissFeavag+gsa+ Yt+lAlk+iS++FrcL+dai++qi
  PEQU_17820 226 ERQELQMKKAKLVGMLGEVEQRYRQYHHQMQIVISSFEAVAGHGSARTYTALALKTISKQFRCLRDAISGQI 297
                 79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-63157295IPR006563POX domain
PfamPF075268.5E-51162294IPR006563POX domain
PROSITE profilePS5007112.05342405IPR001356Homeobox domain
SMARTSM003891.2E-9345409IPR001356Homeobox domain
CDDcd000861.73E-12345406No hitNo description
SuperFamilySSF466892.44E-17346411IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29348411IPR009057Homeodomain-like
PfamPF059203.3E-18362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MATYFHGASE IHPDGLQTLY LMNPGYVGYS PTGAPAAANM VFLNSGGIPS LNPINLSHSS  60
QSNHQQQHFV GIPLPPPAEN TVSRFHYNLW SPAPGTNLMN RGTTQQGLSL SLSPQQPPPY  120
GTYRAEAEVS TQVHEMSSLA GEDSVKLMGT TGPPGATEIQ SVLMNSKYLK AAQELLDEVV  180
SVGKGARAET LKKNGEKSPM KSNKESDGKG EGESSGKREV DLTTAERQEL QMKKAKLVGM  240
LGEVEQRYRQ YHHQMQIVIS SFEAVAGHGS ARTYTALALK TISKQFRCLR DAISGQIKAT  300
GRSLGEEDCL VGGAKSIGSR LRLVDHHLRQ QRALQQLGMM QHNAWRPQRG LPERAVSILR  360
AWLFEHFLHP YPKDSDKLML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YVEEIKEQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-17351409563Homeobox protein Meis2
3k2a_B9e-17351409563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572836.10.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-118BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2I0W3Q70.0A0A2I0W3Q7_9ASPA; BEL1-like homeodomain protein 1
STRINGXP_008799712.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-99BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]