![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_17658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 30349.1 Da PI: 5.017 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36 | 1.8e-11 | 102 | 159 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr..krfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +gr+ AeIr + +g + +r g f+taeeAa+ ++ a+++++ge PEQU_17658 102 KKFRGVRQRP-WGRFSAEIRNpIRGkRGwlGNlrRR---GPFDTAEEAAAVYDLAALQIKGE 159 59********.**********443355564222133...66****************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 4.7E-47 | 13 | 262 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 2.76E-24 | 102 | 167 | No hit | No description |
Pfam | PF00847 | 4.0E-6 | 103 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 103 | 167 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.373 | 103 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-22 | 103 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-24 | 103 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 148 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MNQSITEKRR RGIHIAGATA GVTNKITSPS ATEQSGKIVR IFFSDADATD SSSSEEDEPT 60 QRRQAKRFVH EIAMVTSISG DQKPHQRLTL PPAVPPPDGQ RKKFRGVRQR PWGRFSAEIR 120 NPIRGKRGWL GNLRRRGPFD TAEEAAAVYD LAALQIKGEK AITNFPVGKI RHESESSEEE 180 AAPPPAVEAM AGLAASIPSP TSVLQFKEEE ELPLGEWIGY GVVDAFGFSV EEGPLCLADS 240 FIPKPASWEK IESEELDDLL LLEAAGLPSF GFATEWE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 102 | 167 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-16 | 102 | 167 | 4 | 64 | ATERF1 |
3gcc_A | 2e-16 | 102 | 167 | 4 | 64 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596787.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A2I0XDN1 | 1e-107 | A0A2I0XDN1_9ASPA; Ethylene-responsive transcription factor CRF4 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13140 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23750.2 | 9e-15 | cytokinin response factor 2 |