PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_17473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 121aa MW: 13841.2 Da PI: 4.5826 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 18 | 70 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd s + +r++lg+f taeeAa+a+++a+ +++ge PEQU_17473 18 TRYRGVRRRP-WGKFAAEIRDSSR---QgARVWLGTFNTAEEAARAYDRAAYSMRGE 70 68********.**********422...24**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.91E-21 | 18 | 78 | No hit | No description |
Pfam | PF00847 | 4.8E-16 | 18 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-33 | 19 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-24 | 19 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.802 | 19 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 19 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-12 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-12 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
IHNSNPMEKK DEGESKETRY RGVRRRPWGK FAAEIRDSSR QGARVWLGTF NTAEEAARAY 60 DRAAYSMRGE FAVLNFPDEL HLYANDASGS SSETKKEVIE FECLDDKVLE DMLDSGEEDK 120 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-33 | 15 | 108 | 10 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581086.1 | 2e-79 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-41 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2I0WQ41 | 1e-47 | A0A2I0WQ41_9ASPA; Ethylene-responsive transcription factor ERF098 | ||||
STRING | EMT26497 | 2e-46 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 4e-33 | ERF family protein |
Publications ? help Back to Top | |||
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