PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_17158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C3H | ||||||||
Protein Properties | Length: 356aa MW: 40688.7 Da PI: 4.9954 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5.2e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ PEQU_17158 90 KSILCEFFKA-GQCAKGFKCKFSHD 113 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.159 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.319 | 161 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9 | 161 | 198 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 1.4E-17 | 220 | 303 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MPPKQQSKAE LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LQQSVQPKPD PSKAAAKKKL 60 EDEKAREKEL NDLFKVAVSQ PKVPIGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR DQQSTETMEE WDQETLEKVV ESKRSEYNQN KPTEIVCKFF LEAVEKKQYG 180 WFWSCPNGGK DCHYRHALPP GYILKSQMKA LLEEEADKKA IEEEIEDQRG KLSSTTPMTP 240 ELFQQWKIKK VAEKEAALAA NQAERAKNDR MSGRELFLSD ASLFVDDAEA YEKYQREDSD 300 GEEKAKESKI GEPSTSKSVE EDEILAEDDD DDLDMDELNE LEATLSRTTL EIHSSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574423.1 | 0.0 | zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q0JHZ2 | 1e-174 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | A0A2I0XES7 | 0.0 | A0A2I0XES7_9ASPA; Zinc finger CCCH domain-containing protein 11 | ||||
STRING | ERM95716 | 0.0 | (Amborella trichopoda) | ||||
STRING | XP_010067249.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8859 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-136 | C3H family protein |
Publications ? help Back to Top | |||
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