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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_16670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25072.3 Da PI: 10.0424 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 96 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f taeeAa a+++a+ +++g PEQU_16670 96 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEEAALAYDRAAYRMRG 146 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-29 | 95 | 156 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-33 | 95 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-23 | 96 | 155 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-38 | 96 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-14 | 96 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.381 | 96 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
SLDSIRRHLL DDSEMSSSAV TAPPQTVYHR TSSFGRLVAD HWIDLPFRPA IVIYLTPHDA 60 FSHGWLPSAC HPAAPVPPLP AKPDSREMEA PAKGKHYRGV RQRPWGKFAA EIRDPAKNGA 120 RVWLGTFETA EEAALAYDRA AYRMRGSRAL LNFPQQISVE ADSPSPAAAK RVSPERSTLS 180 LSSSSSLPIS QSEGSTKRRK RGEAVASLRL ESPATVMAYP DPAAVQLPAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-39 | 92 | 158 | 1 | 67 | ATERF1 |
3gcc_A | 2e-39 | 92 | 158 | 1 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576316.1 | 1e-166 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q9LW50 | 2e-51 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A2I0X200 | 6e-98 | A0A2I0X200_9ASPA; Ethylene-responsive transcription factor 1A | ||||
STRING | XP_008813598.1 | 3e-59 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3800 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-37 | ethylene responsive element binding factor 1 |