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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_16669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 84aa MW: 9200.28 Da PI: 10.4498 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 24 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 g +GVr ++ +g+++AeIrdp + k r++lg+f+ta eAa+a++ a+ +++g PEQU_16669 24 GSRGVRKRP-WGKFAAEIRDP---KrKGSRIWLGTFDTAVEAARAYDSAAFEMRG 74 569******.**********8...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.406 | 24 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-14 | 25 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-23 | 25 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-32 | 26 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-32 | 26 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.28E-27 | 26 | 83 | No hit | No description |
PRINTS | PR00367 | 5.5E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
IQPDPDSIRS TAGDTAAYGI DGRGSRGVRK RPWGKFAAEI RDPKRKGSRI WLGTFDTAVE 60 AARAYDSAAF EMRGSKAILN FPNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-27 | 26 | 84 | 16 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576319.1 | 7e-39 | ethylene-responsive transcription factor ERF105-like isoform X1 | ||||
Refseq | XP_020576320.1 | 7e-39 | ethylene-responsive transcription factor ERF105-like isoform X2 | ||||
Swissprot | O80341 | 2e-29 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
Swissprot | Q40478 | 1e-29 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
Swissprot | Q8VY90 | 3e-30 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A2I0X202 | 2e-32 | A0A2I0X202_9ASPA; Ethylene-responsive transcription factor 5 | ||||
STRING | XP_008779563.1 | 3e-31 | (Phoenix dactylifera) | ||||
STRING | XP_008781946.1 | 8e-31 | (Phoenix dactylifera) | ||||
STRING | XP_008786269.1 | 3e-31 | (Phoenix dactylifera) | ||||
STRING | GSMUA_Achr2P10490_001 | 2e-31 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-32 | ERF family protein |
Publications ? help Back to Top | |||
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