PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16498
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 304aa    MW: 34082.9 Da    PI: 10.202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16498genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.4e-1497148155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  PEQU_16498  97 QRMTHIAVERNRRRQMNEHLAMLRSLMPES---YIQRGDQASIVGGAIDFVKELE 148
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.09E-1395152No hitNo description
SuperFamilySSF474591.44E-1695165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.35196147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1497165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-1197148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTASRPHQSF INNSHQVYSL IWPAAALAPS RRCSAASRHL QPRSSLHLLP APGCRGSESG  60
GAGRGXXXXX XXXXXXXRRK RRRRPRSCKN KEEAETQRMT HIAVERNRRR QMNEHLAMLR  120
SLMPESYIQR GDQASIVGGA IDFVKELEHL LQSLEAQKRA IEQTQKANVC INDSGNGLKK  180
SNEETEQPPF AQFFSYPQYN WCHPRHHASL RILSPKRPRQ LIQLVAGLHA VRLSILHLNV  240
TTLDSIVLYS LSVKVDEGCS LTTVDEIAAA VHHMLSLIEA DKVSAIHQVL QDELASSPGP  300
PLSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783RRKRRRR
27882RKRRR
37885RKRRRRPR
497108RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572213.11e-153LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T46e-65BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2I0X1U31e-134A0A2I0X1U3_9ASPA; Transcription factor bHLH96
STRINGXP_008796282.19e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]