PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_16203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 19869.3 Da PI: 10.097 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.2 | 3.2e-21 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa+a+++a+++l+g PEQU_16203 39 HYRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARNLRG 88 69*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.66E-22 | 39 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 39 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-37 | 39 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.89E-29 | 39 | 97 | No hit | No description |
Pfam | PF00847 | 4.7E-14 | 39 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 39 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-11 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-11 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAVDTLRVGK GGFAAGEEKT APPSGAAGGG NGGGTKEGHY RGVRKRPWGR FAAEIRDPWK 60 KTRKWLGTFD TAEEAARAYD EAARNLRGPK AKTNFTDGDT PSSESISPPA IWTAAQWPSG 120 FADSRDLVIA TPTAGSEFSG YRFDAVEMLV RSEQEKKKIK SGAQDERIVK KPLGFDLNLP 180 PPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-22 | 29 | 95 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 34 | SGAAGGGNGGGT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576263.1 | 1e-131 | ethylene-responsive transcription factor ERF098-like | ||||
TrEMBL | A0A2I0VIK5 | 8e-91 | A0A2I0VIK5_9ASPA; Ethylene-responsive transcription factor 3 | ||||
STRING | XP_008778306.1 | 6e-68 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 2e-23 | ethylene response factor 8 |