PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16180
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARR-B
Protein Properties Length: 678aa    MW: 74221.6 Da    PI: 6.3303
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16180genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.6e-28219272155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  PEQU_16180 219 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 272
                 79*******************.********************************8 PP
2Response_reg78.62.2e-26341421109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+ +l+k +y +v++++++  al ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a g  + + + +k Ga 
    PEQU_16180  34 VLVVDDDVTCLKILEHMLQKCRY-HVTTCSEALTALSLLRERKggFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHGAC 128
                   89*********************.***************999999*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
    PEQU_16180 129 DYLIKPVRIEELKN 142
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-16711636IPR017053Response regulator B-type, plant
SuperFamilySSF521721.42E-3631161IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.2E-4331171No hitNo description
SMARTSM004485.5E-3032144IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.53233148IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2334142IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.18E-2735147No hitNo description
Gene3DG3DSA:1.10.10.604.3E-30216277IPR009057Homeodomain-like
PROSITE profilePS5129411.002216275IPR017930Myb domain
SuperFamilySSF466891.34E-19217276IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-25219272IPR006447Myb domain, plants
PfamPF002496.4E-7221270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MQKLSAQSYS SCRADAGEST VLSSPELFPA GLRVLVVDDD VTCLKILEHM LQKCRYHVTT  60
CSEALTALSL LRERKGGFDV VISDVHMPDM DGFKLLELVG LEMDLPVIMM SADGRTSAVM  120
RGIKHGACDY LIKPVRIEEL KNIWQHVVRK KWNENRDVEH SGSFEDSDRQ RRLADEAEYD  180
SSINEGTDGS WKSQKKKRDS KDDEEDGELD NEDPSASKKP RVVWSVELHQ QFVNAVNQLG  240
IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRISGV TQHQSVLPNP FCAPVEPNTK  300
VGSVGRLDFH SLAATGQIPP QTLAVLHAEL LGRPSGNIVL PAIDSTVLLQ ASSQNSKFLP  360
SEKEIAFGQP LFKCQSGISK PCPPSGINTQ DTPSSFSSWP SSQVAITASN NELGGLNNAQ  420
NNHLLMQMLQ HQQQQQHHQE EPFNLVASES HNAINVQPSC LVVPSQLPSS LNGGNCSMVV  480
APQQSSNIKL GSSSVPTSNS TFNGTGITFD YTIHSSQSTN ATLGMGRTDS DFKNIGLSSS  540
FSPLASVSPS VSSSSVCTSV GGWRLQNSNM NFGFHKSLGQ VPNSRFLGPE VKSPAISVNY  600
ENVRNSGFVG KGTCLPSRFA VDDIESPTND WNNMKMSMFD DVDKVKQELN LDFLEGSKVE  660
KTMLPNFPSN DFMGVVSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-23215278164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081412e-46FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576239.10.0two-component response regulator ORR21-like isoform X2
SwissprotQ8H7S71e-176ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2I0VIL40.0A0A2I0VIL4_9ASPA; Two-component response regulator ARR2
STRINGXP_008812974.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-119response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]