PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_16069
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 230aa    MW: 25528.1 Da    PI: 10.0642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_16069genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-21144194256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+ge
  PEQU_16069 144 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEQAAMAYDKAAYRLRGE 194
                 59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-34143202No hitNo description
Gene3DG3DSA:3.30.730.103.4E-32144202IPR001471AP2/ERF domain
PROSITE profilePS5103223.13144201IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-23144201IPR016177DNA-binding domain
SMARTSM003801.6E-37144207IPR001471AP2/ERF domain
PRINTSPR003672.5E-11145156IPR001471AP2/ERF domain
PfamPF008473.5E-14145194IPR001471AP2/ERF domain
PRINTSPR003672.5E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAAAIDLYNT RAAISSRTEL MEAEPFIKSA SSSSLTPIKN ISFKPSSVSL SPLPYSSASY  60
FDPPTPQNPI FDYCPTSISN PEISHGLLTS NQPIRLNHLG TSQLQQIQTQ LQLHHQRNLL  120
SLRPQTMKLS GGCAAISPAK TTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEQA  180
AMAYDKAAYR LRGEFAHLNF PNIRQDVAGV ELQSSVDAKL EVICNKMGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22143201160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22143201463ATERF1
3gcc_A5e-22143201463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020697480.11e-101ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E42e-54RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A455LAF01e-101A0A455LAF0_9ASPA; Ethylene-responsive transcription factor RAP2-like protein
STRINGBostr.20129s0241.1.p4e-59(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-50ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]