PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 283aa MW: 32303.8 Da PI: 7.0166 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 18 | 78 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d s+n k+ k+++lg + ++ Aa+a++ a++k++g+ PEQU_15800 18 SVYRGVTRHRWTGRYEAHLWDkNSWNEsqkKKgKQVYLGAYYDEDAAARAYDLAALKYWGH 78 78*******************888877776447******999999*************997 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 120 | 171 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I g +k+ +lg++ t eeAa a++ a+ +++g PEQU_15800 120 SKYRGVARHHHNGRWEARIGRvH---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 171 89****99**********98833...3.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-16 | 18 | 87 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-11 | 18 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 19 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.546 | 19 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-23 | 19 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 20 | 31 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-22 | 120 | 181 | No hit | No description |
Pfam | PF00847 | 5.1E-12 | 120 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-18 | 120 | 181 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.321 | 121 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 121 | 180 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-25 | 121 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 161 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
EDKEERSVPR DSPLQRSSVY RGVTRHRWTG RYEAHLWDKN SWNESQKKKG KQVYLGAYYD 60 EDAAARAYDL AALKYWGHET ILNFPLSTYQ EELRDMQGQS KEEYIGSLRR KSSGFSRGVS 120 KYRGVARHHH NGRWEARIGR VHGNKYLYLG TYATQEEAAT AYDMAAIEYR GLNAVTNFDL 180 SHYRALINTN TMTNAAATNI STLGLILQSS KFKQMLERTA MFDASSVPNE FVGEQWPRCS 240 FPDDIQTYFG CHDNGGFNVE GDGTLFGELN AFEPPVFQCG LDL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587932.1 | 1e-171 | LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-108 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2I0WVD1 | 1e-146 | A0A2I0WVD1_9ASPA; AP2-like ethylene-responsive transcription factor | ||||
STRING | Aquca_048_00034.1 | 1e-139 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-98 | AP2 family protein |
Publications ? help Back to Top | |||
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