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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13957.4 Da PI: 8.6425 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6.3e-16 | 11 | 103 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++++ +s+v +lv+p +f ++ + + ++ + +g+ We+++ ++ ++ GW++Fv++n+L++gD +vF+l++++e +++v++++ PEQU_15655 11 FISIMAKSHVQLPYQLVVPTSFRDALPSATVKG----VLACRGKIWEIRY--CGDCTLKRFGVGWRKFVEDNELRVGDGCVFELMDDKELRFRVQILDG 103 778899999999999*******87776554454....55679********..777777779************************99********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-20 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-17 | 8 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.90E-17 | 9 | 102 | No hit | No description |
PROSITE profile | PS50863 | 12.957 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.5E-6 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-13 | 11 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
EILPLLGNPY FISIMAKSHV QLPYQLVVPT SFRDALPSAT VKGVLACRGK IWEIRYCGDC 60 TLKRFGVGWR KFVEDNELRV GDGCVFELMD DKELRFRVQI LDGQIPTKIF KRGSLERPIN 120 ID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572392.1 | 1e-86 | B3 domain-containing protein Os04g0386900-like | ||||
Swissprot | Q7XLP4 | 5e-35 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A2I0WYG8 | 3e-68 | A0A2I0WYG8_9ASPA; B3 domain-containing protein | ||||
STRING | XP_008776698.1 | 2e-38 | (Phoenix dactylifera) | ||||
STRING | XP_008802551.1 | 3e-38 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 8e-09 | B3 family protein |
Publications ? help Back to Top | |||
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